Fitting and validation of an agent-based model for COVID-19 case forecasting in workplaces and universities

被引:2
|
作者
Kumaresan, Vignesh [1 ]
Balachandar, Niranjan [1 ]
Poole, Sarah F. [1 ]
Myers, Lance J. [1 ]
Varghese, Paul [1 ]
Washington, Vindell [1 ]
Jia, Yugang [1 ]
Lee, Vivian S. [1 ]
机构
[1] Verily Life Sci, South San Francisco, CA 94080 USA
来源
PLOS ONE | 2023年 / 18卷 / 03期
关键词
D O I
10.1371/journal.pone.0283517
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
COVID-19 forecasting models have been critical in guiding decision-making on surveillance testing, social distancing, and vaccination requirements. Beyond influencing public health policies, an accurate COVID-19 forecasting model can impact community spread by enabling employers and university leaders to adapt worksite policies and practices to contain or mitigate outbreaks. While many such models have been developed for COVID-19 forecasting at the national, state, county, or city level, only a few models have been developed for workplaces and universities. Furthermore, COVID-19 forecasting models have rarely been validated against real COVID-19 case data. Here we present the systematic parameter fitting and validation of an agent-based compartment model for the forecasting of daily COVID-19 cases in single-site workplaces and universities with real-world data. Our approaches include manual fitting, where initial model parameters are chosen based on historical data, and automated fitting, where parameters are chosen based on candidate case trajectory simulations that result in best fit to prevalence estimation data. We use a 14-day fitting window and validate our approaches on 7- and 14-day testing windows with real COVID-19 case data from one employer. Our manual and automated fitting approaches accurately predicted COVID-19 case trends and outperformed the baseline model (no parameter fitting) across multiple scenarios, including a rising case trajectory (RMSLE values: 2.627 for baseline, 0.562 for manual fitting, 0.399 for automated fitting) and a decreasing case trajectory (RMSLE values: 1.155 for baseline, 0.537 for manual fitting, 0.778 for automated fitting). Our COVID-19 case forecasting model allows decision-makers at workplaces and universities to proactively respond to case trend forecasts, mitigate outbreaks, and promote safety.
引用
收藏
页数:12
相关论文
共 50 条
  • [1] An Agent-Based Model of COVID-19
    Wolfram, Christopher
    COMPLEX SYSTEMS, 2020, 29 (01): : 87 - 105
  • [2] Agent-based modelling of reactive vaccination of workplaces and schools against COVID-19
    Faucher, Benjamin
    Assab, Rania
    Roux, Jonathan
    Levy-Bruhl, Daniel
    Kiem, Cecile Tran
    Cauchemez, Simon
    Zanetti, Laura
    Colizza, Vittoria
    Boelle, Pierre-Yves
    Poletto, Chiara
    NATURE COMMUNICATIONS, 2022, 13 (01)
  • [3] Agent-based modelling of reactive vaccination of workplaces and schools against COVID-19
    Benjamin Faucher
    Rania Assab
    Jonathan Roux
    Daniel Levy-Bruhl
    Cécile Tran Kiem
    Simon Cauchemez
    Laura Zanetti
    Vittoria Colizza
    Pierre-Yves Boëlle
    Chiara Poletto
    Nature Communications, 13
  • [4] An Agent-Based Modeling of COVID-19: Validation, Analysis, and Recommendations
    Shamil, Md. Salman
    Farheen, Farhanaz
    Ibtehaz, Nabil
    Khan, Irtesam Mahmud
    Rahman, M. Sohel
    COGNITIVE COMPUTATION, 2024, 16 (04) : 1723 - 1734
  • [5] Agent-based mathematical model of COVID-19 spread in Novosibirsk region: Identifiability, optimization and forecasting
    Krivorotko, Olga
    Sosnovskaia, Mariia
    Kabanikhin, Sergey
    JOURNAL OF INVERSE AND ILL-POSED PROBLEMS, 2023, 31 (03): : 409 - 425
  • [6] COVID-19 Spatial Diffusion: A Markovian Agent-Based Model
    Gribaudo, Marco
    Iacono, Mauro
    Manini, Daniele
    MATHEMATICS, 2021, 9 (05) : 1 - 12
  • [7] Covasim: An agent-based model of COVID-19 dynamics and interventions
    Kerr, Cliff C.
    Stuart, Robyn M.
    Mistry, Dina
    Abeysuriya, Romesh G.
    Rosenfeld, Katherine
    Hart, Gregory R.
    Nunez, Rafael C.
    Cohen, Jamie A.
    Selvaraj, Prashanth
    Hagedorn, Brittany
    George, Lauren
    Jastrzebski, Michal
    Izzo, Amanda S.
    Fowler, Greer
    Palmer, Anna
    Delport, Dominic
    Scott, Nick
    Kelly, Sherrie L.
    Bennette, Caroline S.
    Wagner, Bradley G.
    Chang, Stewart T.
    Oron, Assaf P.
    Wenger, Edward A.
    Panovska-Griffiths, Jasmina
    Famulare, Michael
    Klein, Daniel J.
    PLOS COMPUTATIONAL BIOLOGY, 2021, 17 (07)
  • [8] An agent-based model to assess citizens' acceptance of COVID-19 restrictions
    Falcone, Rino
    Sapienza, Alessandro
    JOURNAL OF SIMULATION, 2023, 17 (01) : 105 - 119
  • [9] Mathematical Modelling of COVID-19 Incidence in Moscow with an Agent-Based Model
    Vlasov V.V.
    Deryabin A.M.
    Zatsepin O.V.
    Kaminsky G.D.
    Karamov E.V.
    Karmanov A.L.
    Lebedev S.N.
    Rykovanov G.N.
    Sokolov A.V.
    Teplykh M.A.
    Turgiyev A.S.
    Khatuntsev K.E.
    Journal of Applied and Industrial Mathematics, 2023, 17 (02) : 433 - 450
  • [10] Modelling COVID-19 transmission in supermarkets using an agent-based model
    Ying, Fabian
    O'Clery, Neave
    PLOS ONE, 2021, 16 (04):