Various glutenite reservoirs, developed by fans, can be found in the Junggar Basin. Among these, there are different interpretations of the glutenite reservoirs formed by shallow-water fan deltas in the Triassic system in the northwestern margin of the basin. The characteristics of these deltas and their reservoir architecture have not been understood clearly. It seriously restricts the advancement of the subsequent development of the oilfield. Therefore, it is of great significance to carry out the fine reservoir architecture characterization of the shallow-water fan delta in this area. In this study, the upper member of the Triassic Karamay Formation in the Bai 21 area was selected as the study site. Through core analysis, nine types of sedimentary microfacies, including mudflow deposit, braided river, flood plain, underwater main channel, underwater distributary channel, overbank channel, interchannel deposition, estuary bar, and sheet sand, are found. Through mixed-phase wavelet frequency extension, the main frequency of seismic data is moderately increased and the frequency band is broadened, which makes it possible to identify the thin layer of about 10 m. Through continuous stratal slicing, the thin-layer sedimentary bodies that are difficult to be distinguished in the vertical direction are depicted, and the distribution of sedimentary bodies at different vertical positions is obtained by browsing the slices. Through color fusion based on seismic frequency decomposition, the fusion results contain information reflecting the thickness, and the characterization effect of the fan boundary is significantly improved. In summary, this study depicts the distribution of single-stage fans and recognizes the sand body development characteristics of the two-stage fans. Research suggests that two large shallow-water fan-delta complexes were discovered in the S3 sand group within the study area. Each fan possesses a multilevel branching distributary channel system, resulting in multiple horizontally oriented lobes. Within the fan-delta complex in S3, which is the third sand group in the Upper Triassic Karamay Formation, the fan complex can be divided into two single-stage fans recorded in the sublayer S31 and S32 upward. The two-stage fan deltas show inherited development characteristics in sedimentary characteristics and form in a regression sequence. The sand bodies formed during the low-water-level stage in S31 are thick, with few interlayers developed. Most sand bodies intersect each other vertically. In the shallow fan delta, a widespread estuary bar is deposited, which develops along the underwater distributary channel. This research enhances the understanding of shallow-water fan-delta reservoirs in the study area, and it provides a precise target for oilfield development and solves the key problem of unclear understanding of sand body distribution and combination relationships, which restricts development.