Furopyridine Derivatives as Potent Inhibitors of the Wild Type, L858R/T790M, and L858R/T790M/C797S EGFR

被引:1
|
作者
Todsaporn, Duangjai [1 ]
Zubenko, Alexander [2 ]
Kartsev, Victor G. [3 ]
Mahalapbutr, Panupong [4 ]
Geronikaki, Athina [5 ]
Sirakanyan, Samvel N. [6 ]
Divaeva, Lyudmila N. [7 ]
Chekrisheva, Victoria [2 ]
Yildiz, Ilkay [8 ]
Choowongkomon, Kiattawee [9 ]
Rungrotmongkol, Thanyada [1 ,10 ]
机构
[1] Chulalongkorn Univ, Fac Sci, Ctr Excellence Biocatalyst & Sustainable Biotechno, Dept Biochem, Bangkok 10330, Thailand
[2] North Caucasian Zonal Res Vet Inst, Novocherkassk 346406, Russia
[3] InterBioScreen, Moscow 85355, Russia
[4] Khon Kaen Univ, Fac Med, Dept Biochem, Khon Kaen 40002, Thailand
[5] Aristotle Univ Thessaloniki, Sch Hlth, Dept Pharmaceut Chem, Thessaloniki 54124, Greece
[6] Armenian Acad Sci, Inst Fine Organ Chem AL Mnjoyan, Sci Technol Ctr Organ & Pharmaceut Chem, Yerevan 0014, Armenia
[7] Southern Fed Univ, Inst Phys & Organ Chem, Rostov Na Donu 344090, Russia
[8] Ankara Univ, Fac Pharm, Dept Pharmaceut Chem, TR-06100 Ankara, Turkiye
[9] Kasetsart Univ, Fac Sci, Dept Biochem, Bangkok 10900, Thailand
[10] Chulalongkorn Univ, Grad Sch, Program Bioinformat & Computat Biol, Bangkok 10330, Thailand
来源
JOURNAL OF PHYSICAL CHEMISTRY B | 2024年 / 128卷 / 50期
关键词
CELL LUNG-CANCER; GENE AMPLIFICATION; MOLECULAR-DYNAMICS; KINASE INHIBITORS; RESISTANCE; EXPRESSION; GEFITINIB; CARCINOMA; ERLOTINIB; INSIGHTS;
D O I
10.1021/acs.jpcb.4c06246
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The treatment of patients with nonsmall cell lung cancer (NSCLC) using epidermal growth factor receptor (EGFR) inhibitors is complicated by drug-sensitive activating L858R/T790M and L858R/T790M/C797S mutations. To overcome drug resistance, a series of furopyridine (PD) compounds were virtually screened to identify potent EGFR inhibitors using molecular docking and molecular dynamics (MD) simulations based on the solvated interaction energy (SIE) method. Several PD compounds identified from virtual screening demonstrated the potential to suppress both wild-type and mutant forms of EGFR, with IC50 values in the nanomolar range. Among these, PD18 and PD56 exhibited highly potent inhibitory activity against both wild-type and mutant forms of EGFR, surpassing the efficacy of known drugs. Additionally, both PD compounds were cytotoxic to NSCLC cell lines (A549 and H1975) while being nontoxic to normal cell lines (Vero). The interaction mechanisms of both PD compounds complexed with wild-type and mutant forms of EGFR were elucidated through 500 ns molecular dynamics simulations. The predicted binding affinity from molecular mechanics/Poisson-Boltzmann surface area (MM/PBSA) correlated well with the experimental binding affinity derived from IC50 values. Furthermore, it was observed that van der Waals interactions, rather than electrostatic interactions, played a significant role in interacting with EGFR's active site. The strong inhibitory activity against EGFR was attributed to two key residues, M793 and S797, via hydrogen bonding, corresponding with lower solvent accessibility and a higher number of atomic contacts. Therefore, these potent compounds could be developed as promising drugs targeting both wild-type and mutant EGFR for the treatment of NSCLC.
引用
收藏
页码:12389 / 12402
页数:14
相关论文
共 50 条
  • [1] Synthesis and biological evaluation of anilide derivatives as epidermal growth factor receptor L858R/T790M and L858R/T790M/C797S inhibitors
    Kim, Soo Lim
    Yang, Yo-Sep
    Lee, Sujin
    Kim, Nam-Jung
    BULLETIN OF THE KOREAN CHEMICAL SOCIETY, 2022, 43 (08) : 1032 - 1036
  • [2] Structural dynamics and kinase inhibitory activity of three generations of tyrosine kinase inhibitors against wild-type, L858R/T790M, and L858R/ T790M/C797S forms of EGFR
    Todsaporn, Duangjai
    Mahalapbutr, Panupong
    Poo-arporn, Rungtiva P.
    Choowongkomon, Kiattawee
    Rungrotmongkol, Thanyada
    COMPUTERS IN BIOLOGY AND MEDICINE, 2022, 147
  • [3] Binding mechanism of kinase inhibitors to EGFR and T790M, L858R and L858R/T790M mutants through structural and energetic analysis
    Bello, Martiniano
    INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2018, 118 : 1948 - 1962
  • [4] Structural insight into the binding mechanism of ATP to EGFR and L858R, and T790M and L858R/T790 mutants
    Saldana-Rivera, Lucia
    Bello, Martiniano
    Mendez-Luna, David
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2019, 37 (17): : 4671 - 4684
  • [5] Discovery and optimization of covalent EGFR T790M/L858R mutant inhibitors
    Hoogenboom, Niels
    Demont, Dennis
    de Zwart, Edwin
    Verkaik, Saskia
    Emmelot, Maaike
    van de Kar, Bas
    Kaptein, Allard
    Barf, Tjeerd
    BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2021, 52
  • [6] Identification of Novel Fourth-Generation Allosteric Inhibitors Targeting Inactive State of EGFR T790M/L858R/C797S and T790M/L858R Mutations: A Combined Machine Learning and Molecular Dynamics Approach
    Bhanja, Kousik K.
    Patra, Niladri
    JOURNAL OF PHYSICAL CHEMISTRY B, 2025,
  • [7] Trisubstituted Imidazoles with a Rigidized Hinge Binding Motif Act As Single Digit nM Inhibitors of Clinically Relevant EGFR L858R/T790M and L858R/T790M/C797S Mutants: An Example of Target Hopping
    Juchum, Michael
    Guenther, Marcel
    Doering, Eva
    Sievers-Engler, Adrian
    Laemmerhofer, Michael
    Laufer, Stefan
    JOURNAL OF MEDICINAL CHEMISTRY, 2017, 60 (11) : 4636 - 4656
  • [8] L858R/T790M Discovery of highly potent and selective CRBN-recruiting EGFRL858R/T790M degraders in vivo
    Zhang, Wenjuan
    Li, Pengyun
    Sun, Shiyang
    Jia, Changkai
    Yang, Ning
    Zhuang, Xiaomei
    Zheng, Zhibing
    Li, Song
    EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY, 2022, 238
  • [9] QSAR of clinically important EGFR mutant L858R/T790M pyridinylimidazole inhibitors
    Fatima, Shehnaz
    Pal, Divyani
    Agarwal, Subhash Mohan
    CHEMICAL BIOLOGY & DRUG DESIGN, 2019, 94 (01) : 1306 - 1315
  • [10] Detection of EGFR Mutations T790M and L858R for Therapeutic Guidance of NSCLC
    Rana, M.
    Asil, S. M.
    Boutin, C.
    Kachwala, M. J.
    Espejo, J.
    Argun, A. A.
    JOURNAL OF THORACIC ONCOLOGY, 2024, 19 (10) : S496 - S496