Building a vision for reproducibility in the cyberinfrastructure ecosystem: Leveraging community efforts

被引:0
|
作者
Chapp D. [1 ]
Stodden V. [2 ]
Taufer M. [1 ]
机构
[1] University of Tennessee, Knoxville, TN
[2] National Center for Supercomputing Applications, University of Illinois at Urbana Champaign, Champaign, IL
基金
美国国家科学基金会;
关键词
High-performance computing; In situ analytics; Molecular dynamics; Replicability; Reproducibility; Transparency;
D O I
10.14529/js200106
中图分类号
学科分类号
摘要
The scientific computing community has long taken a leadership role in understanding and assessing the relationship of reproducibility to cyberinfrastructure, ensuring that computational results-such as those from simulations-are "reproducible", that is, the same results are obtained when one re-uses the same input data, methods, software and analysis conditions. Starting almost a decade ago, the community has regularly published and advocated for advances in this area. In this article we trace this thinking and relate it to current national efforts, including the 2019 National Academies of Science, Engineering, and Medicine report on "Reproducibility and Replication in Science". To this end, this work considers high performance computing workflows that emphasize workflows combining traditional simulations (e.g. Molecular Dynamics simulations) with in situ analytics. We leverage an analysis of such workflows to (a) contextualize the 2019 National Academies of Science, Engineering, and Medicine report's recommendations in the HPC setting and (b) envision a path forward in the tradition of community driven approaches to reproducibility and the acceleration of science and discovery. The work also articulates avenues for future research at the intersection of transparency, reproducibility, and computational infrastructure that supports scientific discovery. © The Authors 2020. This paper is published with open access at SuperFri. org.
引用
收藏
页码:112 / 119
页数:7
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