scRFR: imputation of single-cell RNA-seq data based on recurrent feature inference

被引:0
|
作者
Zhu, Bangyu [1 ]
Zhang, Shaoqiang [1 ]
Li, Lixuan [1 ]
Qian, Zhizhong [1 ]
机构
[1] Tianjin Normal Univ, 393 Extension Bin Shui West Rd, Tianjin, Peoples R China
关键词
Bionformatics; scRNA-seq; dropout; RFR; imputation; Computer vision;
D O I
10.1145/3665689.3665759
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
The area of single-cell RNA sequencing, or scRNA-seq, is expanding quickly and aids in the analysis of expression status. It provides a powerful tool for determining precise expression of tens of thousands of single cells, deciphering cell heterogeneity and cell subsets, etc. Nevertheless, the scRNA-seq data contains a great deal of biological and technical noise, and the associated analysis still has a long way to go. We introduced scRFR, a technique for imputation of scRNA-seq data based on recurrent feature reasoning for Image Inpainting, in order to address "dropout" noise seen in scRNA-seq data. It was discovered through testing that this algorithm has a greater imputation accuracy.
引用
收藏
页码:420 / 424
页数:5
相关论文
共 50 条
  • [1] AutoImpute: Autoencoder based imputation of single-cell RNA-seq data
    Divyanshu Talwar
    Aanchal Mongia
    Debarka Sengupta
    Angshul Majumdar
    Scientific Reports, 8
  • [2] AutoImpute: Autoencoder based imputation of single-cell RNA-seq data
    Talwar, Divyanshu
    Mongia, Aanchal
    Sengupta, Debarka
    Majumdar, Angshul
    SCIENTIFIC REPORTS, 2018, 8
  • [3] SCRABBLE: single-cell RNA-seq imputation constrained by bulk RNA-seq data
    Peng, Tao
    Zhu, Qin
    Yin, Penghang
    Tan, Kai
    GENOME BIOLOGY, 2019, 20 (1)
  • [4] SCRABBLE: single-cell RNA-seq imputation constrained by bulk RNA-seq data
    Tao Peng
    Qin Zhu
    Penghang Yin
    Kai Tan
    Genome Biology, 20
  • [5] Evaluating imputation methods for single-cell RNA-seq data
    Yi Cheng
    Xiuli Ma
    Lang Yuan
    Zhaoguo Sun
    Pingzhang Wang
    BMC Bioinformatics, 24
  • [6] Evaluating imputation methods for single-cell RNA-seq data
    Cheng, Yi
    Ma, Xiuli
    Yuan, Lang
    Sun, Zhaoguo
    Wang, Pingzhang
    BMC BIOINFORMATICS, 2023, 24 (01)
  • [7] Locality Sensitive Imputation for Single-Cell RNA-Seq Data
    Moussa, Marmar
    Mandoiu, Ion I.
    BIOINFORMATICS RESEARCH AND APPLICATIONS, ISBRA 2018, 2018, 10847 : 347 - 360
  • [8] Correlation Imputation for Single-Cell RNA-seq
    Gan, Luqin
    Vinci, Giuseppe
    Allen, Genevera I.
    JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 29 (05) : 465 - 482
  • [9] Phylogenetic inference from single-cell RNA-seq data
    Liu, Xuan
    Griffiths, Jason I.
    Bishara, Isaac
    Liu, Jiayi
    Bild, Andrea H.
    Chang, Jeffrey T.
    SCIENTIFIC REPORTS, 2023, 13 (01)
  • [10] Phylogenetic inference from single-cell RNA-seq data
    Xuan Liu
    Jason I. Griffiths
    Isaac Bishara
    Jiayi Liu
    Andrea H. Bild
    Jeffrey T. Chang
    Scientific Reports, 13