Mechanistic insights into G-protein activation via phosphorylation mediated non-canonical pathway

被引:0
|
作者
Shewani, Kunal [1 ]
Madhu, Midhun K. [2 ]
Murarka, Rajesh K. [1 ]
机构
[1] Indian Inst Sci Educ & Res Bhopal, Dept Chem, Bhopal Bypass Rd, Bhopal 462066, MP, India
[2] Indian Inst Sci Educ & Res Bhopal, Dept Biol Sci, Bhopal Bypass Rd, Bhopal 462066, MP, India
关键词
G -protein activation; RTK phosphorylation; GDP unbinding; Markov state model; Well -tempered metadynamics; Molecular dynamics simulation; GROWTH-FACTOR RECEPTOR; MOLECULAR-DYNAMICS; TYROSINE KINASES; ALPHA-SUBUNIT; EGF RECEPTOR; COUPLED RECEPTORS; SOFTWARE NEWS; STATE MODELS; TRANSACTIVATION; SIGNALS;
D O I
10.1016/j.bpc.2024.107234
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Activation of heterotrimeric G -proteins ( G alpha fi gamma ) downstream to receptor tyrosine kinases (RTKs) is a wellestablished crosstalk between the signaling pathways mediated by G -protein coupled receptors (GPCRs) and RTKs. While GPCR serves as a guanine exchange factor (GEF) in the canonical activation of G alpha that facilitates the exchange of GDP for GTP, the mechanism through which RTK phosphorylations induce G alpha activation remains unclear. Recent experimental studies revealed that the epidermal growth factor receptor (EGFR), a well-known RTK, phosphorylates the helical domain tyrosine residues Y154 and Y155 and accelerates the GDP release from the G alpha i 3, a subtype of G alpha-protein. Using well -tempered metadynamics and extensive unbiased molecular dynamics simulations, we captured the GDP release event and identified the intermediates between bound and unbound states through Markov state models. In addition to weakened salt bridges at the domain interface, phosphorylations induced the unfolding of helix alpha F, which contributed to increased flexibility near the hinge region, facilitating a greater distance between domains in the phosphorylated G alpha i 3. Although the larger domain separation in the phosphorylated system provided an unobstructed path for the nucleotide, the accelerated release of GDP was attributed to increased fluctuations in several conserved regions like P -loop, switch 1, and switch 2. Overall, this study provides atomistic insights into the activation of G -proteins induced by RTK phosphorylations and identifies the specific structural motifs involved in the process. The knowledge gained from the study could establish a foundation for targeting non -canonical signaling pathways and developing therapeutic strategies against the ailments associated with dysregulated G -protein signaling.
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页数:12
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