NCI Cancer Research Data Commons: Lessons Learned and Future State

被引:6
|
作者
Kim, Erika [1 ]
Davidsen, Tanja [1 ]
Davis-Dusenbery, Brandi N. [2 ]
Baumann, Alexander [3 ]
Maggio, Angela [4 ]
Chen, Zhaoyi [1 ,5 ]
Meerzaman, Daoud [1 ]
Casas-Silva, Esmeralda [1 ]
Pot, David [6 ]
Pihl, Todd [7 ]
Otridge, John [7 ]
Shalley, Eve [8 ]
Barnholtz-Sloan, Jill S. [1 ,9 ]
Kerlavage, Anthony R. [1 ]
机构
[1] NCI, Ctr Biomed Informat & Informat Technol, Rockville, MD 20850 USA
[2] Velsera Seven Bridges, Charlestown, MA USA
[3] Broad Inst, Cambridge, MA USA
[4] Deloitte Consulting LLP, Arlington, VA USA
[5] NIH, Bethesda, MD USA
[6] Gen Dynam Informat Technol, Falls Church, VA USA
[7] Frederick Natl Lab Canc Res, Frederick, MD USA
[8] Emmes Co, Essex, Rockville, MD USA
[9] Div Canc Epidemiol & Genet, NCI, Rockville, MD USA
关键词
GENOMICS CLOUD;
D O I
10.1158/0008-5472.CAN-23-2730
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
More than ever, scientific progress in cancer research hinges on our ability to combine datasets and extract meaningful interpretations to better understand diseases and ultimately inform the development of better treatments and diagnostic tools. To enable the successful sharing and use of big data, the NCI developed the Cancer Research Data Commons (CRDC), providing access to a large, comprehensive, and expanding collection of cancer data. The CRDC is a cloud-based data science infrastructure that eliminates the need for researchers to download and store large-scale datasets by allowing them to perform analysis where data reside. Over the past 10 years, the CRDC has made significant progress in providing access to data and tools along with training and outreach to support the cancer research community. In this review, we provide an overview of the history and the impact of the CRDC to date, lessons learned, and future plans to further promote data sharing, accessibility, interoperability, and reuse.See related articles by Brady et al., p. 1384, Wang et al., p. 1388, and Pot et al., p. 1396
引用
收藏
页码:1404 / 1409
页数:6
相关论文
共 50 条
  • [1] NCI Cancer Research Data Commons: Resources to Share Key Cancer Data
    Wang, Zhining
    Davidsen, Tanja M.
    Kuffel, Gina R.
    Addepalli, Kanakadurga
    Bell, Amanda
    Casas-Silva, Esmeralda
    Dingerdissen, Hayley
    Farahani, Keyvan
    Fedorov, Andrey
    Gaheen, Sharon
    Grossman, Robert L.
    Kikinis, Ron
    Kim, Erika
    Otridge, John
    Pihl, Todd
    Porter, Melissa
    Rodriguez, Henry
    Staudt, Louis M.
    Thangudu, Ratna R.
    Venkatachari, Sudha
    Zenklusen, Jean Claude
    Zhang, Xu
    Barnholtz-Sloan, Jill S.
    Kerlavage, Anthony R.
    CANCER RESEARCH, 2024, 84 (09) : 1388 - 1395
  • [2] NCI Cancer Research Data Commons: Core Standards and Services
    Brady, Arthur
    Charbonneau, Amanda
    Grossman, Robert L.
    Creasy, Heather H.
    Renner, Robinette
    Pihl, Todd
    Otridge, John
    Kim, Erika
    Barnholtz-Sloan, Jill S.
    Kerlavage, Anthony R.
    CANCER RESEARCH, 2024, 84 (09) : 1384 - 1387
  • [3] NCI Cancer Research Data Commons: Cloud-Based Analytic Resources
    Pot, David
    Worman, Zelia
    Baumann, Alexander
    Pathak, Shirish
    Beck, Rowan
    Beck, Erin
    Thayer, Katherine
    Davidsen, Tanja M.
    Kim, Erika
    Davis-Dusenbery, Brandi
    Otridge, John
    Pihl, Todd
    Barnholtz-Sloan, Jill S.
    Kerlavage, Anthony R.
    CANCER RESEARCH, 2024, 84 (09) : 1396 - 1403
  • [4] NCI Imaging Data Commons
    Fedorov, Andrey
    Longabaugh, William J. R.
    Pot, David
    Clunie, David A.
    Pieper, Steve
    Aerts, Hugo J. W. L.
    Homeyer, Andre
    Lewis, Rob
    Akbarzadeh, Afshin
    Bontempi, Dennis
    Clifford, William
    Herrmann, Markus D.
    Hoefener, Henning
    Octaviano, Igor
    Osborne, Chad
    Paquette, Suzanne
    Petts, James
    Punzo, Davide
    Reyes, Madelyn
    Schacherer, Daniela P.
    Tian, Mi
    White, George
    Ziegler, Erik
    Shmulevich, Ilya
    Pihl, Todd
    Wagner, Ulrike
    Farahani, Keyvan
    Kikinis, Ron
    CANCER RESEARCH, 2021, 81 (16) : 4188 - 4193
  • [5] NCI Imaging Data Commons
    Fedorov, A.
    Longabaugh, W.
    Pot, D.
    Clunie, D.
    Pieper, S.
    Lewis, R.
    Aerts, H.
    Homeyer, A.
    Herrmann, M.
    Wagner, U.
    Pihl, T.
    Farahani, K.
    Kikinis, R.
    INTERNATIONAL JOURNAL OF RADIATION ONCOLOGY BIOLOGY PHYSICS, 2021, 111 (03): : E101 - E101
  • [6] The NCI Genomic Data Commons
    Allison P. Heath
    Vincent Ferretti
    Stuti Agrawal
    Maksim An
    James C. Angelakos
    Renuka Arya
    Rosita Bajari
    Bilal Baqar
    Justin H. B. Barnowski
    Jeffrey Burt
    Ann Catton
    Brandon F. Chan
    Fay Chu
    Kim Cullion
    Tanja Davidsen
    Phuong-My Do
    Christian Dompierre
    Martin L. Ferguson
    Michael S. Fitzsimons
    Michael Ford
    Miyuki Fukuma
    Sharon Gaheen
    Gajanan L. Ganji
    Tzintzuni I. Garcia
    Sameera S. George
    Daniela S. Gerhard
    Francois Gerthoffert
    Fauzi Gomez
    Kang Han
    Kyle M. Hernandez
    Biju Issac
    Richard Jackson
    Mark A. Jensen
    Sid Joshi
    Ajinkya Kadam
    Aishmit Khurana
    Kyle M. J. Kim
    Victoria E. Kraft
    Shenglai Li
    Tara M. Lichtenberg
    Janice Lodato
    Laxmi Lolla
    Plamen Martinov
    Jeffrey A. Mazzone
    Daniel P. Miller
    Ian Miller
    Joshua S. Miller
    Koji Miyauchi
    Mark W. Murphy
    Thomas Nullet
    Nature Genetics, 2021, 53 : 257 - 262
  • [7] The NCI Genomic Data Commons
    Heath, Allison P.
    Ferretti, Vincent
    Agrawal, Stuti
    An, Maksim
    Angelakos, James C.
    Arya, Renuka
    Bajari, Rosita
    Baqar, Bilal
    Barnowski, Justin H. B.
    Burt, Jeffrey
    Catton, Ann
    Chan, Brandon F.
    Chu, Fay
    Cullion, Kim
    Davidsen, Tanja
    Do, Phuong-My
    Dompierre, Christian
    Ferguson, Martin L.
    Fitzsimons, Michael S.
    Ford, Michael
    Fukuma, Miyuki
    Gaheen, Sharon
    Ganji, Gajanan L.
    Garcia, Tzintzuni I.
    George, Sameera S.
    Gerhard, Daniela S.
    Gerthoffert, Francois
    Gomez, Fauzi
    Han, Kang
    Hernandez, Kyle M.
    Issac, Biju
    Jackson, Richard
    Jensen, Mark A.
    Joshi, Sid
    Kadam, Ajinkya
    Khurana, Aishmit
    Kim, Kyle M. J.
    Kraft, Victoria E.
    Li, Shenglai
    Lichtenberg, Tara M.
    Lodato, Janice
    Lolla, Laxmi
    Martinov, Plamen
    Mazzone, Jeffrey A.
    Miller, Daniel P.
    Miller, Ian
    Miller, Joshua S.
    Miyauchi, Koji
    Murphy, Mark W.
    Nullet, Thomas
    NATURE GENETICS, 2021, 53 (03) : 257 - 262
  • [8] NCI Imaging Data Commons
    Fedorov, A.
    Longabaugh, W.
    Pot, D.
    Clunie, D.
    Pieper, S.
    Lewis, R.
    Aerts, H.
    Homeyer, A.
    Herrmann, M.
    Wagner, U.
    Pihl, T.
    Farahani, K.
    Kikinis, R.
    MEDICAL PHYSICS, 2021, 48 (06)
  • [9] Shaping the future of cancer research at NCI
    Zaromytidou, Alexia-Ileana
    NATURE CANCER, 2020, 1 (01) : 7 - 11
  • [10] Shaping the future of cancer research at NCI
    Alexia-Ileana Zaromytidou
    Nature Cancer, 2020, 1 : 7 - 11