A comprehensive benchmark for COVID-19 predictive modeling using electronic health records in intensive care

被引:1
|
作者
Gao, Junyi [2 ,3 ]
Zhu, Yinghao [1 ]
Wang, Wenqing [1 ]
Wang, Zixiang [1 ]
Dong, Guiying [4 ]
Tang, Wen [5 ]
Wang, Hao [1 ]
Wang, Yasha [1 ]
Harrison, Ewen M. [2 ]
Ma, Liantao [1 ]
机构
[1] Peking Univ, Beijing 100871, Peoples R China
[2] Univ Edinburgh, Ctr Med Informat, Edinburgh EH16 4UX, Scotland
[3] Hlth Data Res UK, London NW1 2BE, England
[4] Peking Univ Peoples Hosp, Beijing 100044, Peoples R China
[5] Peking Univ Third Hosp, Beijing 100191, Peoples R China
来源
PATTERNS | 2024年 / 5卷 / 04期
基金
中国国家自然科学基金;
关键词
benchmark; COVID-19; deep learning; EHR; electronic health record; ICU; intensive care unit; length-of-stay prediction; mortality prediction;
D O I
10.1016/j.patter.2024.100951
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
The COVID-19 pandemic highlighted the need for predictive deep -learning models in health care. However, practical prediction task design, fair comparison, and model selection for clinical applications remain a challenge. To address this, we introduce and evaluate two new prediction tasks-outcome-specific length -ofstay and early -mortality prediction for COVID-19 patients in intensive care-which better reflect clinical realities. We developed evaluation metrics, model adaptation designs, and open -source data preprocessing pipelines for these tasks while also evaluating 18 predictive models, including clinical scoring methods and traditional machine -learning, basic deep -learning, and advanced deep -learning models, tailored for electronic health record (EHR) data. Benchmarking results from two real -world COVID-19 EHR datasets are provided, and all results and trained models have been released on an online platform for use by clinicians and researchers. Our efforts contribute to the advancement of deep -learning and machine -learning research in pandemic predictive modeling.
引用
收藏
页数:16
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