SpatialCells: Automated profiling of tumor microenvironments with spatially resolved multiplexed single-cell data

被引:0
|
作者
Wan, Guihong
机构
关键词
D O I
10.1158/1538-7445.AM2024-7409
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
7409
引用
收藏
页数:2
相关论文
共 50 条
  • [1] SpatialCells: automated profiling of tumor microenvironments with spatially resolved multiplexed single-cell data
    Wan, Guihong
    Maliga, Zoltan
    Yan, Boshen
    Vallius, Tuulia
    Shi, Yingxiao
    Khattab, Sara
    Chang, Crystal
    Nirmal, Ajit J.
    Yu, Kun-Hsing
    Liu, David
    Lian, Christine G.
    DeSimone, Mia S.
    Sorger, Peter K.
    Semenov, Yevgeniy R.
    BRIEFINGS IN BIOINFORMATICS, 2024, 25 (03)
  • [2] Spatially resolved single-cell metabolic profiling of the melanoma tumor microenvironment using Multiplexed Ion Beam Imaging (MIBI)
    Truxa, Sven
    Melanie, Wiecken
    Jessica, Hassel
    Felix, Hartmann
    EUROPEAN JOURNAL OF IMMUNOLOGY, 2024, 54 : 1741 - 1741
  • [3] Multiplexed laser particles for spatially resolved single-cell analysis
    Sheldon J. J. Kwok
    Nicola Martino
    Paul H. Dannenberg
    Seok-Hyun Yun
    Light: Science & Applications, 8
  • [4] Multiplexed laser particles for spatially resolved single-cell analysis
    Kwok, Sheldon J. J.
    Martino, Nicola
    Dannenberg, Paul H.
    Yun, Seok-Hyun
    LIGHT-SCIENCE & APPLICATIONS, 2019, 8 (1)
  • [5] Annotation of spatially resolved single-cell data with STELLAR
    Brbic, Maria
    Cao, Kaidi
    Hickey, John W.
    Tan, Yuqi
    Snyder, Michael P.
    Nolan, Garry P.
    Leskovec, Jure
    NATURE METHODS, 2022, 19 (11) : 1411 - +
  • [6] Annotation of spatially resolved single-cell data with STELLAR
    Maria Brbić
    Kaidi Cao
    John W. Hickey
    Yuqi Tan
    Michael P. Snyder
    Garry P. Nolan
    Jure Leskovec
    Nature Methods, 2022, 19 : 1411 - 1418
  • [7] Spatially and Single-Cell Resolved Profiling of RNA Life Cycle and Epitranscriptomics
    Zhou, Qiyang
    Guo, Jianting
    Wang, Xiao
    ISRAEL JOURNAL OF CHEMISTRY, 2024, 64 (05)
  • [8] Spatially resolved, highly multiplexed RNA profiling in single cells
    Chen, Kok Hao
    Boettiger, Alistair N.
    Moffitt, Jeffrey R.
    Wang, Siyuan
    Zhuang, Xiaowei
    SCIENCE, 2015, 348 (6233)
  • [9] A SIMPLI (Single-cell Identification from MultiPLexed Images) approach for spatially-resolved tissue phenotyping at single-cell resolution
    Bortolomeazzi, Michele
    Montorsi, Lucia
    Temelkovski, Damjan
    Keddar, Mohamed Reda
    Acha-Sagredo, Amelia
    Pitcher, Michael J.
    Basso, Gianluca
    Laghi, Luigi
    Rodriguez-Justo, Manuel
    Spencer, Jo
    Ciccarelli, Francesca D.
    NATURE COMMUNICATIONS, 2022, 13 (01)
  • [10] A SIMPLI (Single-cell Identification from MultiPLexed Images) approach for spatially-resolved tissue phenotyping at single-cell resolution
    Michele Bortolomeazzi
    Lucia Montorsi
    Damjan Temelkovski
    Mohamed Reda Keddar
    Amelia Acha-Sagredo
    Michael J. Pitcher
    Gianluca Basso
    Luigi Laghi
    Manuel Rodriguez-Justo
    Jo Spencer
    Francesca D. Ciccarelli
    Nature Communications, 13