Carbohydrate-active enzyme (CAZyme) discovery and engineering via (Ultra)high-throughput screening

被引:0
|
作者
Wardman, Jacob F. [1 ,2 ]
Withers, Stephen G. [1 ,2 ,3 ]
机构
[1] Univ British Columbia, Dept Biochem & Mol Biol, Vancouver, BC V6T 1Z3, Canada
[2] Univ British Columbia, Michael Smith Labs, Vancouver, BC V6T 1Z4, Canada
[3] Univ British Columbia, Dept Chem, Vancouver, BC V6T 1Z1, Canada
来源
RSC CHEMICAL BIOLOGY | 2024年 / 5卷 / 07期
基金
加拿大健康研究院; 加拿大自然科学与工程研究理事会;
关键词
AGROBACTERIUM BETA-GLUCOSIDASE; DIRECTED EVOLUTION; MUTANT GLYCOSIDASES; GALACTOSE-OXIDASE; ESCHERICHIA-COLI; O-GLYCOSYLATION; PLATE ASSAY; SITE; GALNAC; GLYCOSYLTRANSFERASE;
D O I
10.1039/d4cb00024b
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Carbohydrate-active enzymes (CAZymes) constitute a diverse set of enzymes that catalyze the assembly, degradation, and modification of carbohydrates. These enzymes have been fashioned into potent, selective catalysts by millennia of evolution, and yet are also highly adaptable and readily evolved in the laboratory. To identify and engineer CAZymes for different purposes, (ultra)high-throughput screening campaigns have been frequently utilized with great success. This review provides an overview of the different approaches taken in screening for CAZymes and how mechanistic understandings of CAZymes can enable new approaches to screening. Within, we also cover how cutting-edge techniques such as microfluidics, advances in computational approaches and synthetic biology, as well as novel assay designs are leading the field towards more informative and effective screening approaches.
引用
收藏
页码:595 / 616
页数:22
相关论文
共 50 条
  • [1] NMR-Based Structural Glycomics for High-Throughput Screening of Carbohydrate-Active Enzyme Specificity
    Irague, Romain
    Massou, Stephane
    Moulis, Claire
    Saurel, Olivier
    Milon, Alain
    Monsan, Pierre
    Remaud-Simeon, Magali
    Portais, Jean-Charles
    Potocki-Veronese, Gabrielle
    ANALYTICAL CHEMISTRY, 2011, 83 (04) : 1202 - 1206
  • [2] Accelerating enzyme discovery and engineering with high-throughput screening
    Bozkurt, Eray U.
    Orsted, Emil C.
    Volke, Daniel C.
    Nikel, Pablo I.
    NATURAL PRODUCT REPORTS, 2024,
  • [3] Carbohydrate-Active enZyme (CAZyme) enabled glycoengineering for a sweeter future
    Bandi, Chandra Kanth
    Agrawal, Ayushi
    Chundawat, Shishir P. S.
    CURRENT OPINION IN BIOTECHNOLOGY, 2020, 66 : 283 - 291
  • [4] High-Throughput Approaches in Carbohydrate-Active Enzymology: Glycosidase and Glycosyl Transferase Inhibitors, Evolution, and Discovery
    Chao, Lemeng
    Jongkees, Seino
    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2019, 58 (37) : 12750 - 12760
  • [5] dbCAN-seq: a database of carbohydrate-active enzyme (CAZyme) sequence and annotation
    Huang, Le
    Zhang, Han
    Wu, Peizhi
    Entwistle, Sarah
    Li, Xueqiong
    Yohe, Tanner
    Yi, Haidong
    Yang, Zhenglu
    Yin, Yanbin
    NUCLEIC ACIDS RESEARCH, 2018, 46 (D1) : D516 - D521
  • [6] Lectin and carbohydrate microarrays: New high-throughput methods for glycoprotein, carbohydrate-binding protein and carbohydrate-active enzyme analysis
    Fais, Margherita
    Karamanska, Rositsa
    Russell, David A.
    Field, Robert A.
    JOURNAL OF CEREAL SCIENCE, 2009, 50 (03) : 306 - 311
  • [7] High-Throughput Screening for the Discovery of Enzyme Inhibitors
    Lloyd, Matthew D.
    JOURNAL OF MEDICINAL CHEMISTRY, 2020, 63 (19) : 10742 - 10772
  • [8] High-throughput screening technologies for enzyme engineering
    Longwell, Chelsea K.
    Labanieh, Louai
    Cochran, Jennifer R.
    CURRENT OPINION IN BIOTECHNOLOGY, 2017, 48 : 196 - 202
  • [9] Genome Sequencing and Carbohydrate-Active Enzyme (CAZyme) Repertoire of the White Rot Fungus Flammulina elastica
    Park, Young-Jin
    Jeong, Yong-Un
    Kong, Won-Sik
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2018, 19 (08)
  • [10] High-Throughput In Vitro Glycoside Hydrolase (HIGH) Screening for Enzyme Discovery
    Kim, Tae-Wan
    Chokhawala, Harshal A.
    Hess, Matthias
    Dana, Craig M.
    Baer, Zachary
    Sczyrba, Alexander
    Rubin, Edward M.
    Blanch, Harvey W.
    Clark, Douglas S.
    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2011, 50 (47) : 11215 - 11218