Harmonic and anharmonic vibrational computations for biomolecular building blocks: Benchmarking DFT and basis sets by theoretical and experimental IR spectrum of glycine conformers

被引:6
|
作者
Xu, Ruiqin [1 ]
Jiang, Zhongming [2 ]
Yang, Qin [3 ]
Bloino, Julien [2 ]
Biczysko, Malgorzata [1 ]
机构
[1] Shanghai Univ, Coll Sci, Dept Phys, 99 Shangda Rd, Shanghai 200444, Peoples R China
[2] Scuola Normale Super Pisa, Classe Sci, Piazza Cavalieri 7, I-56126 Pisa, Italy
[3] Czech Acad Sci, Inst Organ Chem & Biochem, Flemingovo Namesti 542-2, Prague 16000, Czech Republic
基金
中国国家自然科学基金;
关键词
benchmark; biomolecules; database; DFT; vibrational spectroscopy; VPT2; DENSITY-FUNCTIONAL THEORY; MOLECULAR-ORBITAL METHODS; GAUSSIAN-BASIS SETS; PLESSET PERTURBATION-THEORY; RAMAN OPTICAL-ACTIVITY; ZETA VALENCE QUALITY; MATRIX-ISOLATION; AB-INITIO; INFRARED-SPECTROSCOPY; CIRCULAR-DICHROISM;
D O I
10.1002/jcc.27377
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Advanced vibrational spectroscopic experiments have reached a level of sophistication that can only be matched by numerical simulations in order to provide an unequivocal analysis, a crucial step to understand the structure-function relationship of biomolecules. While density functional theory (DFT) has become the standard method when targeting medium-size or larger systems, the problem of its reliability and accuracy are well-known and have been abundantly documented. To establish a reliable computational protocol, especially when accuracy is critical, a tailored benchmark is usually required. This is generally done over a short list of known candidates, with the basis set often fixed a priori. In this work, we present a systematic study of the performance of DFT-based hybrid and double-hybrid functionals in the prediction of vibrational energies and infrared intensities at the harmonic level and beyond, considering anharmonic effects through vibrational perturbation theory at the second order. The study is performed for the six-lowest energy glycine conformers, utilizing available "state-of-the-art" accurate theoretical and experimental data as reference. Focusing on the most intense fundamental vibrations in the mid-infrared range of glycine conformers, the role of the basis sets is also investigated considering the balance between computational cost and accuracy. Targeting larger systems, a broad range of hybrid schemes with different computational costs is also tested. The performance of density functional theory functionals and basis sets in the prediction of vibrational spectra is benchmarked on the six-lowest energy glycine conformers, considering the cost/accuracy ratio and available "state-of-the-art" accurate harmonic theoretical and anharmonic experimental reference data. Targeting larger systems, a broad range of hybrid schemes with different computational costs is also tested. image
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页码:1846 / 1869
页数:24
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