Estimating a novel stochastic model for within-field disease dynamics of banana bunchy top virus via approximate Bayesian computation

被引:4
|
作者
Varghese A. [1 ,2 ]
Drovandi C. [1 ,2 ]
Mira A. [3 ,4 ]
Mengersen K. [1 ,2 ]
机构
[1] School of Mathematical Sciences, Queensland University of Technology, Brisbane
[2] ARC Centre for Excellence in Mathematical and Statistical Frontiers (ACEMS), Brisbane
[3] Institute of Computational Science, Università della Svizzera italiana, Lugano
[4] Department of Science and High Technology, Università degli Studi dell’Insubria, Como
来源
PLoS Computational Biology | 2020年 / 16卷 / 05期
基金
澳大利亚研究理事会;
关键词
Bayesian networks - Decision making - Fruits - Parameter estimation - Stochastic systems - Viruses;
D O I
10.1371/journal.pcbi.1007878
中图分类号
学科分类号
摘要
The Banana Bunchy Top Virus (BBTV) is one of the most economically important vector-borne banana diseases throughout the Asia-Pacific Basin and presents a significant challenge to the agricultural sector. Current models of BBTV are largely deterministic, limited by an incomplete understanding of interactions in complex natural systems, and the appropriate identification of parameters. A stochastic network-based Susceptible-Infected-Susceptible model has been created which simulates the spread of BBTV across the subsections of a banana plantation, parameterising nodal recovery, neighbouring and distant infectivity across summer and winter. Findings from posterior results achieved through Markov Chain Monte Carlo approach to approximate Bayesian computation suggest seasonality in all parameters, which are influenced by correlated changes in inspection accuracy, temperatures and aphid activity. This paper demonstrates how the model may be used for monitoring and forecasting of various disease management strategies to support policy-level decision making. © 2020 Varghese et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
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