Graph convolutional network based virus-human protein-protein interaction prediction for novel viruses

被引：0
|
作者：
Koca, Mehmet Burak [1 ]
Nourani, Esmaeil [2 ]
Abbasoğlu, Ferda [1 ]
Karadeniz, İlknur [3 ]
Sevilgen, Fatih Erdoğan [1 ,4 ]
机构：
[1] Department of Computer Engineering, Faculty of Engineering, Gebze Technical University, Kocaeli, Turkey
[2] Department of Information Technology, Faculty of Computer Engineering and Information Technology, Azarbaijan Shahid Madani University, Tabriz, Iran
[3] Department of Computer Engineering, Faculty of Engineering and Natural Sciences, Işık University, İstanbul, Turkey
[4] Institute for Data Science and Artificial Intelligence, Boğaziçi University, İstanbul, Turkey
来源：
Computational Biology and Chemistry | 2022年 / 101卷
关键词：
D O I：
暂无
中图分类号：
学科分类号：
摘要：
43
引用
收藏
相关论文
共 50 条
  • [1] Graph convolutional network based virus-human protein-protein interaction prediction for novel viruses
    Koca, Mehmet Burak
    Nourani, Esmaeil
    Abbasoglu, Ferda
    Karadeniz, Ilknur
    Sevilgen, Fatih Erdogan
    COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2022, 101
  • [2] Alpha influenza virus infiltration prediction using virus-human protein-protein interaction network
    Khorsand B.
    Savadi A.
    Zahiri J.
    Naghibzadeh M.
    Savadi, Abdorreza (savadi@um.ac.ir), 2020, American Institute of Mathematical Sciences (17) : 3109 - 3129
  • [3] Alpha influenza virus infiltration prediction using virus-human protein-protein interaction network
    Khorsand, Babak
    Savadi, Abdorreza
    Zahiri, Javad
    Naghibzadeh, Mahmoud
    MATHEMATICAL BIOSCIENCES AND ENGINEERING, 2020, 17 (04) : 3109 - 3129
  • [4] RGCNPPIS: A Residual Graph Convolutional Network for Protein-Protein Interaction Site Prediction
    Zhong, Jian
    Zhao, Haochen
    Zhao, Qichang
    Zhou, Ruikang
    Zhang, Lishen
    Guo, Fei
    Wang, Jianxin
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2024, 21 (06) : 1676 - 1684
  • [5] Structure-based prediction of West Nile virus-human protein-protein interactions
    Chen, Jing
    Sun, Jun
    Liu, Xiangming
    Liu, Feng
    Liu, Rong
    Wang, Jia
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2019, 37 (09): : 2310 - 2321
  • [6] Virus-human protein-protein interaction prediction using Bayesian matrix factorization and projection techniques
    Nourani, Esmaeil
    Khunjush, Farshad
    Sevilgen, F. Erdogan
    BIOCYBERNETICS AND BIOMEDICAL ENGINEERING, 2018, 38 (03) : 574 - 585
  • [7] RGN: Residue-Based Graph Attention and Convolutional Network for Protein-Protein Interaction Site Prediction
    Wang, Shuang
    Chen, Wenqi
    Han, Peifu
    Li, Xue
    Song, Tao
    JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2022, 62 (23) : 5961 - 5974
  • [8] A multitask transfer learning framework for the prediction of virus-human protein-protein interactions
    Thi Ngan Dong
    Brogden, Graham
    Gerold, Gisa
    Khosla, Megha
    BMC BIOINFORMATICS, 2021, 22 (01)
  • [9] Reconstruction of dynamic protein-protein interaction network via graph convolutional network☆ ☆
    He, Yue
    Zhu, Fei
    EXPERT SYSTEMS WITH APPLICATIONS, 2025, 259
  • [10] Integrating Sequence and Network Information to Enhance Protein-Protein Interaction Prediction Using Graph Convolutional Networks
    Liu, Leilei
    Ma, Yi
    Zhu, Xianglei
    Yang, Yaodong
    Hao, Xiaotian
    Wang, Li
    Peng, Jiajie
    2019 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (BIBM), 2019, : 1762 - 1768
12345