Mycobacteriophage Genome Database

被引:3
|
作者
Joseph, Jerrine [1 ]
Rajendran, Vasanthi [1 ]
Hassan, Sameer [1 ]
Kumar, Vanaja [1 ]
机构
[1] Indian Council Med Res, Dept Bacteriol, TB Res Ctr, Mayor VR Ramanathan Rd, Madras 600031, Tamil Nadu, India
关键词
Mycobacteriophages; genome; annotation; database; MySQL; PHP;
D O I
10.6026/97320630006393
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Mycobacteriophage genome database (MGDB) is an exclusive repository of the 64 completely sequenced mycobacteriophages with annotated information. It is a comprehensive compilation of the various gene parameters captured from several databases pooled together to empower mycobacteriophage researchers. The MGDB (Version No. 1.0) comprises of 6086 genes from 64 mycobacteriophages classified into 72 families based on ACLAME database. Manual curation was aided by information available from public databases which was enriched further by analysis. Its web interface allows browsing as well as querying the classification. The main objective is to collect and organize the complexity inherent to mycobacteriophage protein classification in a rational way. The other objective is to browse the existing and new genomes and describe their functional annotation.
引用
收藏
页码:393 / 394
页数:2
相关论文
共 50 条
  • [1] Genome Sequence of Mycobacteriophage Cabrinians
    Chudoff, Dylan
    Conboy, Andrew
    Conboy, Danielle
    Atoulelou, Mireille
    Hasan, Sakina
    Martinez, Alexandria
    Mastrando, Jessica
    Roy, Renoy
    Schmidt, Robert
    Sheed, Kabreeze
    Smith, Jewel
    Sperratore, Morgan
    Struga, Rexhina
    Starr, Katelyn
    Suppi, Regina
    Uguru, Ugo
    Terry, Katrina
    Villafuerte, Rosendo
    Yuan, Vanessa
    Dunbar, David
    GENOME ANNOUNCEMENTS, 2016, 4 (01)
  • [2] Genome Sequence of Mycobacteriophage ErnieJ
    Robinson, Courtney J.
    London-Thomas, Laricca Y.
    Dickson, Leon A.
    Clinton, Tiffany A.
    Baig, Hana
    Bute, Maude
    Fahad, Mohammed
    Farrakhan, Kanhai
    Grady, Neshaun
    Guthrie, Nicholas E.
    Hafid, Ruoa
    Harvey, Jayla
    Hunnicutt, Kellie
    Larsen, Victoria L.
    McDuffie, Taashaylaray
    McGee, Earyn N.
    Pailin, Jillian Y.
    Peacock, Bria
    Thomas, Antolice
    Anderson, Winston A.
    GENOME ANNOUNCEMENTS, 2016, 4 (06)
  • [3] Genome Sequence of Mycobacteriophage Mindy
    Pope, Welkin H.
    Bernstein, Nicholas I.
    Fasolas, Christina S.
    Mezghani, Nadia
    Pressimone, Catherine A.
    Selvakumar, Priyanga
    Stanton, Ann-Catherine J.
    Lapin, Jonathan S.
    Prout, Ashley K.
    Grubb, Sarah R.
    Warner, Marcie H.
    Bowman, Charles A.
    Russell, Daniel A.
    Hatfull, Graham F.
    GENOME ANNOUNCEMENTS, 2015, 3 (03)
  • [4] Genome Sequence of Mycobacteriophage Momo
    Pope, Welkin H.
    Bina, Elizabeth A.
    Brahme, Indraneel S.
    Hill, Amy B.
    Himmelstein, Philip H.
    Hunsicker, Sara M.
    Ish, Amanda R.
    Le, Tinh S.
    Martin, Mary M.
    Moscinski, Catherine N.
    Shetty, Sameer A.
    Swierzewski, Tomasz
    Iyengar, Varun B.
    Kim, Hannah
    Schafer, Claire E.
    Grubb, Sarah R.
    Warner, Marcie H.
    Bowman, Charles A.
    Russell, Daniel A.
    Hatfull, Graham F.
    GENOME ANNOUNCEMENTS, 2015, 3 (03)
  • [5] Genome Sequence of Mycobacteriophage Bassalto
    Barekzi, Nazir
    Wilkins, Meagan N.
    Williams, Aumon L.
    Moore, Afiya J.
    Duckett, Zachary R.
    Tindall, Danielle M.
    Eaddy, Donnetta R.
    Johnson, Mary B.
    Bass, Malcolm
    Mageeney, Catherine M.
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2023, 12 (04):
  • [6] Genome Sequence of Mycobacteriophage Phayonce
    Pope, Welkin H.
    Jacobetz, Emily
    Johnson, Courtney A.
    Kihle, Brooke L.
    Sobeski, Margaret A.
    Werner, Madison B.
    Adkins, Nancy L.
    Kramer, Zachary J.
    Montgomery, Matthew T.
    Grubb, Sarah R.
    Warner, Marcie H.
    Bowman, Charles A.
    Russell, Daniel A.
    Hatfull, Graham F.
    GENOME ANNOUNCEMENTS, 2015, 3 (03)
  • [7] Characterization and Genome Sequence of the Mycobacteriophage Donny
    Colston, Lauren E.
    Segura-Totten, Miriam
    Shanks, Ryan A.
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2020, 9 (30):
  • [8] Complete Genome Sequence of Mycobacteriophage IgnatiusPatJac
    Jacobs, Olivia
    Gentle, Nikki
    Ealand, Christopher
    Kana, Bavesh
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2022, 11 (10):
  • [9] Complete Genome Sequence of Mycobacteriophage Fulbright
    Kotturi, Hari
    Sahi, Umar
    Kedy, Cameron
    Ali, Ahmed K.
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2021, 10 (11):
  • [10] Complete genome sequence of Mycobacteriophage Eaglepride
    Sahi, Umar
    Kottury, Niati G.
    Kottury, Nirav R.
    Kotturi, Hari
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2024, 13 (11):