3-DIMENSIONAL STRUCTURE OF 2,3-DIHYDROXYBIPHENYL DIOXYGENASE (BPHC ENZYME) FROM PSEUDOMONAS SP STRAIN-KKS102 HAVING POLYCHLORINATED BIPHENYL (PCB)-DEGRADING ACTIVITY

被引:38
|
作者
SUGIYAMA, K
SENDA, T
NARITA, H
YAMAMOTO, T
KIMBARA, K
FUKUDA, M
YANO, K
MITSUI, Y
机构
[1] Department of BioEngineering, Nagaoka University of Technology, Nagaoka, Niigata
关键词
BPHC; CRYSTAL STRUCTURE; DIOXYGENASE; PCB DEGRADATION; POLYPEPTIDE CHAIN FOLDING; PROTEIN STRUCTURE;
D O I
10.2183/pjab.71.32
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The three-dimensional structure of an enzyme, 2,3-dihydroxybiphenyl dioxygenase, from Pseudomonas sp. strain KKS102 has been solved by X-ray crystal structure analysis. The enzyme conventionally called ''BphC'' is an important member in the biodegradation pathway for PCBs (polychlorinated biphenyls) which are the widely distributed environmental pollutants. The BphC enzyme is an oligomeric enzyme made up of eight identical subunits of 292 amino acid residues. Each subunit consists of two domains: Domain 1 (residues 1 to 135) and Domain 2 (resiudes 136 to 292). Each domain consists of two repetitions of a unique folding motif each consisting of ca. 55 amino acid residues. The unique motif may be classified into an alpha-beta sandwich structure having a ''beta alpha beta beta beta'' type topology. In the active site of each subunit, one Fe ion surrounded by five ligands roughly arranged in a trigonal bipyramidal geometry was found.
引用
收藏
页码:32 / 35
页数:4
相关论文
共 16 条
  • [1] Three-dimensional structure of the 2,3-dihydroxybiphenyl dioxygenase (BphC enzyme) from the polychlorinated biphenyl-degrading organism Pseudomonas sp strain KKS102
    Senda, T
    Mitsui, Y
    MOLECULAR BIOLOGY OF PSEUDOMONADS, 1996, : 311 - 318
  • [2] CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC ANALYSIS OF A 2,3-DIHYDROXYBIPHENYL DIOXYGENASE FROM PSEUDOMONAS SP STRAIN KKS102 HAVING POLYCHLORINATED BIPHENYL (PCB)-DEGRADING ACTIVITY
    SUGIYAMA, K
    NARITA, H
    YAMAMOTO, T
    SENDA, T
    KIMBARA, K
    INOKUCHI, N
    IWAMA, M
    IRIE, M
    FUKUDA, M
    YANO, K
    MITSUI, Y
    PROTEINS-STRUCTURE FUNCTION AND GENETICS, 1995, 22 (03): : 284 - 286
  • [3] 3-D structure of the BphC enzyme from Pseudomonas sp KKS102 having polychlorinated biphenyl-degrading activity
    Narita, H
    Sugiyama, K
    Yamamoto, T
    Senda, T
    Kimbara, K
    Fukuda, M
    Yano, K
    Sato, M
    Mitsui, Y
    PROTEIN ENGINEERING, 1995, 8 (09): : 14 - 14
  • [4] Structure determination of reaction intermediates for 2,3-dihydroxybiphenyl 1,2-dioxygenase (the BphC enzyme) derived from Pseudomonas sp strain KKS102
    Senda, T
    Fukuda, M
    OXYGEN AND LIFE: OXYGENASES, OXIDASE AND LIPID MEDIATORS, 2002, 1233 : 221 - 228
  • [6] CLONING AND SEQUENCING OF 2 TANDEM GENES INVOLVED IN DEGRADATION OF 2,3-DIHYDROXYBIPHENYL TO BENZOIC-ACID IN THE POLYCHLORINATED BIPHENYL-DEGRADING SOIL BACTERIUM PSEUDOMONAS SP STRAIN KKS102
    KIMBARA, K
    HASHIMOTO, T
    FUKUDA, M
    KOANA, T
    TAKAGI, M
    OISHI, M
    YANO, K
    JOURNAL OF BACTERIOLOGY, 1989, 171 (05) : 2740 - 2747
  • [7] CRYSTAL STRUCTURE OF A PCB-DEGRADING DIOXYGENASE, THE BphC ENZYME FROM A PSEUDOMONAS SP
    Mitsui, Y.
    Senda, T.
    Fukuda, M.
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 1996, 52 : C127 - C127
  • [8] CLONING AND NUCLEOTIDE-SEQUENCE OF THE 2,3-DIHYDROXYBIPHENYL DIOXYGENASE GENE FROM THE PCB-DEGRADING STRAIN OF PSEUDOMONAS-PAUCIMOBILIS Q1
    TAIRA, K
    HAYASE, N
    ARIMURA, N
    YAMASHITA, S
    MIYAZAKI, T
    FURUKAWA, K
    BIOCHEMISTRY, 1988, 27 (11) : 3990 - 3996
  • [9] Three-dimensional structures of free form and two substrate complexes of an extradiol ring-cleavage type dioxygenase, the BphC enzyme from Pseudomonas sp strain KKS102
    Senda, T
    Sugiyama, K
    Narita, H
    Yamamoto, T
    Kimbara, K
    Fukuda, M
    Sato, M
    Yano, K
    Mitsui, Y
    JOURNAL OF MOLECULAR BIOLOGY, 1996, 255 (05) : 735 - 752
  • [10] Characterization of a novel thermostable Mn(II)-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase from a polychlorinated biphenyl- and naphthalene-degrading Bacillus sp JF8
    Hatta, T
    Mukerjee-Dhar, G
    Damborsky, J
    Kiyohara, H
    Kimbara, K
    JOURNAL OF BIOLOGICAL CHEMISTRY, 2003, 278 (24) : 21483 - 21492