Mitochondrial DNA (mtDNA) was purified from the Arctic charr, Salvelinus alpinus, the brook charr, Salvelinus fontinalis, and the lake charr, Salvelinus namaycush, and digested with restriction enzymes Ava II, Hinf I, EcoR V, Pst I and XbaI. Two Arctic charr samples were from natural populations and they represented two different morphotypes of Arctic charr. All other studied populations were hatchery maintained. Eight additional restriction enzymes and double digestions were employed to study morphotypes of Arctic charr. We distinguished two morphotypes with restriction enzyme Nci I. Sequence divergence among mtDNA types was 2.9–3.8% between S. alpinus and S. fontinalis, 3.4–4.6% between S. alpinus and S. namaycush, and 4.7–5.3% between S. fontinalis and S. namaycush. lntraspecific variation was lowest in Arctic charr, the average of nucleon diversity for three populations being 0.179, while for brook charr and for lake charr nucleon diversity was 0.334 and 0.550, respectively. According to the number of mtDNA types, it is obvious that introduction to Finland and hatchery propagation have not greatly affected the mtDNA variation of brook charr or lake charr. Copyright © 1991, Wiley Blackwell. All rights reserved