A novel open-access artificial-intelligence-driven platform for CNS drug discovery utilizing adult zebrafish

被引:0
|
作者
Lukovikov, Danil A. [1 ,3 ]
Kolesnikova, Tatiana O. [3 ]
Ikrin, Aleksey N. [2 ,3 ]
Prokhorenko, Nikita O. [3 ]
Shevlyakov, Anton D. [1 ,3 ]
Korotaev, Andrei A. [3 ]
Yang, Longen [4 ,5 ]
Bley, Vea [4 ,6 ]
de Abreu, Murilo S. [7 ,8 ]
V. Kalueff, Allan [3 ,4 ,5 ,9 ,10 ]
机构
[1] Sirius Univ Sci & Technol, Grad Program Bioinformat & Genom, Soci 354340, Russia
[2] Sirius Univ Sci & Technol, Grad Program Genet & Genet Technol, Soci 354340, Russia
[3] Sirius Univ Sci & Technol, Neurosci Dept, Soci 354340, Russia
[4] Xian Jiaotong Liverpool Univ, Sch Sci, Dept Biol Sci, Suzhou 215123, Peoples R China
[5] Xian Jiaotong Liverpool Univ, Sch Sci, Suzhou Key Lab Neurobiol & Cell Signaling, Suzhou 215123, Peoples R China
[6] Univ Florida, Geomat Program, Gainesville, FL 32610 USA
[7] Fed Univ Hlth Sci Porto Alegre, Hlth Sci Grad Program, Porto Alegre, Brazil
[8] Western Caspian Univ, Baku, Azerbaijan
[9] St Petersburg State Univ, Inst Translat Biomed, St Petersburg 199034, Russia
[10] Minist Healthcare Russian Federat, Inst Expt Med, Almazov Natl Med Res Ctr, St Petersburg 194021, Russia
关键词
Zebrafish; Neural networks; Deep learning; Segmentation; Object tracking; Foundation models; Drug screening; BEHAVIOR; EXPOSURE;
D O I
10.1016/j.jneumeth.2024.110256
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Background: Although zebrafish are increasingly utilized in biomedicine for CNS disease modelling and drug discovery, this generates big data necessitating objective, precise and reproducible analyses. The artificial intelligence (AI) applications have empowered automated image recognition and video-tracking to ensure more efficient behavioral testing. New method: Capitalizing on several AI tools that most recently became available, here we present a novel openaccess AI-driven platform to analyze tracks of adult zebrafish collected from in vivo neuropharmacological experiments. For this, we trained the AI system to distinguish zebrafish behavioral patterns following systemic treatment with several well-studied psychoactive drugs - nicotine, caffeine and ethanol. Results: Experiment 1 showed the ability of the AI system to distinguish nicotine and caffeine with 75 % and ethanol with 88 % probability and high (81 %) accuracy following a post-training exposure to these drugs. Experiment 2 further validated our system with additional, previously unexposed compounds (cholinergic arecoline and varenicline, and serotonergic fluoxetine), used as positive and negative controls, respectively. Comparison with existing methods: The present study introduces a novel open-access AI-driven approach to analyze locomotor activity of adult zebrafish. Conclusions: Taken together, these findings support the value of custom-made AI tools for unlocking full potential of zebrafish CNS drug research by monitoring, processing and interpreting the results of in vivo experiments.
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页数:11
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